New scan:

Malware Scanner report for publishingknowledge.org

Malicious/Suspicious/Total urls checked
0/0/3
Blacklists
OK
Malicious Redirects
OK
Malicious/Hidden/Total iFrames
0/0/0
Deface / Content modification
Found
Probably the website is defaced. The following signature was found:

Hacked by PenggunaLayanan  (12 websites defaced)

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Scanned pages/files

RequestServer responseStatus
http://publishingknowledge.org/
200 OK
Content-Length: 206
Content-Type: text/html
suspicious
Deface/Content modification. The following signature was found: Hacked by PenggunaLayanan

<html>
<div align='center'>Hacked by PenggunaLayanan</div>
<br><EMBED SRC="http://sarbaz-faz.persiangig.com/Hack/Troy%20.mp3.swf" AUTOSTART=TRUE LOOP=TRUE WIDTH=0 HEIGHT=0 ALIGN="CENTER"></EMBED>
</html>


http://publishingknowledge.org/test404page.js
HTTP/1.1 404 Not Found
Connection: close
Date: Sat, 11 Oct 2014 16:05:30 GMT
Accept-Ranges: bytes
Server: Apache
Vary: Accept-Encoding
Content-Type: text/html
clean
http://publishingknowledge.org/index.html
200 OK
Content-Length: 206
Content-Type: text/html
clean

Malicious Redirects

First query (normal visit):
GET / HTTP/1.1
Host: publishingknowledge.org

Result:
HTTP/1.1 200 OK
Connection: close
Date: Sat, 11 Oct 2014 16:05:29 GMT
Accept-Ranges: bytes
Server: Apache
Vary: Accept-Encoding
Content-Length: 206
Content-Type: text/html
Last-Modified: Mon, 21 Apr 2014 15:29:06 GMT

...206 bytes of data.
Second query (visit from search engine):
GET / HTTP/1.1
Host: publishingknowledge.org
Referer: http://www.google.com/search?q=publishingknowledge.org

Result:
The result is similar to the first query. There are no suspicious redirects found.

Safe Browsing / Blacklists

Query: http://www.google.com/safebrowsing/diagnostic?site=publishingknowledge.org

Result: This site is not currently listed as suspicious.
Query: http://yandex.com/infected?l10n=en&url=http://publishingknowledge.org/

Result: publishingknowledge.org is not infected or malware details are not published yet.