New scan:

Malware Scanner report for metucam.metu.edu.tr

Malicious/Suspicious/Total urls checked
0/2/4
2 pages have suspicious code. See details below
Blacklists
Found
The website is marked by Yandex as suspicious.

The website "metucam.metu.edu.tr" is probably hacked and losing its visitors. You need to take action as soon as possible to fix security issues.
Malicious Redirects
OK
Malicious/Hidden/Total iFrames
0/0/0
Deface / Content modification
OK

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Safe Browsing / Blacklists

Query: http://www.google.com/safebrowsing/diagnostic?site=metucam.metu.edu.tr

Result: This site is not currently listed as suspicious.
Query: http://yandex.com/infected?l10n=en&url=http://metucam.metu.edu.tr/

Result: The website is marked by Yandex as suspicious. - visiting this web site may harm your computer.
Details are available here.

Scanned pages/files

RequestServer responseStatus
http://metucam.metu.edu.tr/
200 OK
Content-Length: 9530
Content-Type: text/html
suspicious
Page code contains blacklisted domain: teos.cc.metu.edu.tr

...[3533 bytes skipped]...
eader-->

<div class="main">
<div class="item">
<div class="item-bg"></div><!--item-bg-->
<div id="bidb">Loading the player ...</div>
<script type="text/javascript">jwplayer("bidb").setup({height:216,width:264,image:"images/bilgiislem.jpg",modes:[{type:"flash",src:"player.swf",config:{file:"bidb.stream",streamer:"rtmp://teos.cc.metu.edu.tr/bidb",provider:"rtmp"}},{type:"html5",config:{file:"http://teos.cc.metu.edu.tr:1935/bidb/bidb.stream/playlist.m3u8"}}]});</script>
<span class="item-name">METU COMPUTER CENTER <b>BÝLGÝ ÝÞLEM DAÝRESÝ</b></span><!--item-name-->
</div><!--end item-->

<div class="item">
<div class="item-bg"></div><!--item-bg-->
<div
...[6435 bytes skipped]...

http://metucam.metu.edu.tr/jwplayer.js.pagespeed.jm.ebwQ0vjNxw.js
200 OK
Content-Length: 155680
Content-Type: application/javascript
clean
http://metucam.metu.edu.tr/index.php
200 OK
Content-Length: 12332
Content-Type: text/html
suspicious
Page code contains blacklisted domain: teos.cc.metu.edu.tr

...[3597 bytes skipped]...
eader-->

<div class="main">
<div class="item">
<div class="item-bg"></div><!--item-bg-->
<div id="bidb">Loading the player ...</div>
<script type="text/javascript">jwplayer("bidb").setup({height:216,width:264,image:"images/bilgiislem.jpg",modes:[{type:"flash",src:"player.swf",config:{file:"bidb.stream",streamer:"rtmp://teos.cc.metu.edu.tr/bidb",provider:"rtmp"}},{type:"html5",config:{file:"http://teos.cc.metu.edu.tr:1935/bidb/bidb.stream/playlist.m3u8"}}]});</script>
<span class="item-name">METU COMPUTER CENTER <b>BÝLGÝ ÝÞLEM DAÝRESÝ</b></span><!--item-name-->
</div><!--end item-->

<div class="item">
<div class="item-bg"></div><!--item-bg-->
<div
...[9399 bytes skipped]...

http://metucam.metu.edu.tr/test404page.js
404 Not Found
Content-Length: 212
Content-Type: text/html
clean

Malicious Redirects

First query (normal visit):
GET / HTTP/1.1
Host: metucam.metu.edu.tr

Result:
HTTP/1.1 200 OK
Cache-Control: max-age=0, no-cache
Connection: close
Date: Sun, 01 Jun 2014 22:42:03 GMT
Server: Apache
Vary: Accept-Encoding
Content-Length: 9530
Content-Type: text/html; charset=iso-8859-9
X-Mod-Pagespeed: 1.7.30.4-3847

...9530 bytes of data.
Second query (visit from search engine):
GET / HTTP/1.1
Host: metucam.metu.edu.tr
Referer: http://www.google.com/search?q=metucam.metu.edu.tr

Result:
The result is similar to the first query. There are no suspicious redirects found.