New scan:

Malware Scanner report for ap.gov.in

Malicious/Suspicious/Total urls checked
0/1/9
1 page has suspicious code. See details below
Blacklists
Found
The website is marked by Yandex as suspicious.

The website "ap.gov.in" is probably hacked and losing its visitors. You need to take action as soon as possible to fix security issues.
Malicious Redirects
OK
Malicious/Hidden/Total iFrames
0/0/4
Deface / Content modification
OK

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Malware & Hack Repair

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Safe Browsing / Blacklists

Query: http://www.google.com/safebrowsing/diagnostic?site=ap.gov.in

Result: This site is not currently listed as suspicious.
Query: http://yandex.com/infected?l10n=en&url=http://ap.gov.in/

Result: The website is marked by Yandex as suspicious. - visiting this web site may harm your computer.
Details are available here.

Scanned pages/files

RequestServer responseStatus
http://ap.gov.in/
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:36 GMT
Location: http://www.ap.gov.in
Server: Microsoft-IIS/7.5
Content-Length: 143
Content-Type: text/html; charset=UTF-8
X-Powered-By: ASP.NET
clean
http://www.ap.gov.in/
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:12 GMT
Location: http://www.ap.gov.in/Pages/PortalHome.aspx
Server: Microsoft-IIS/7.5
Content-Length: 165
Content-Type: text/html; charset=UTF-8
MicrosoftSharePointTeamServices: 14.0.0.6029
SPRequestGuid: 898969a0-a51a-40eb-a02e-14915d769917
X-Powered-By: ASP.NET
X-SharePointHealthScore: 0
clean
http://www.ap.gov.in/pages/portalhome.aspx
200 OK
Content-Length: 60137
Content-Type: text/html
suspicious
Page code contains blacklisted domain: goir.ap.gov.in

...[40383 bytes skipped]...
></li>
<li><a href="/Pages/LanguageCulture.aspx">Language &amp; Culture</a></li>
<li><a href="/Pages/GovtInitiatives.aspx">Initiatives</a></li>
<li><a href="http://www.apfinance.gov.in/" target="_blank">Budget</a></li>
<li><a href="/Pages/TendersandNotices.aspx">Tenders</a></li>
<li><a href="http://goir.ap.gov.in/Reports.aspx" target="_blank">Govt. Orders</a></li>
<li><a href="http://gazette.ap.gov.in/" target="_blank">AP Gazette</a></li>
<li><a href="http://gms.ap.gov.in/" target="_blank">Citizen Interface</a></li>
<li><a href="https://legacy.ap.gov.in/" target="_blank">Govt. Mail</a></li>
<li><a href="http://cm.ap.gov.in/press.asp" target="_blank">Press Releases</a>&
...[30023 bytes skipped]...

http://www.ap.gov.in/pages/../../images/jquery-1.4.2.js
403 Forbidden
Content-Length: 312
Content-Type: text/html
clean
http://www.ap.gov.in/test404page.js
404 NOT FOUND
Content-Length: 13
clean
http://ap.gov.in/../../images/jquery.li-scroller.1.0.js
403 Forbidden
Content-Length: 312
Content-Type: text/html
clean
http://ap.gov.in/WebResource.axd?d=OzYfoH9_ahFKdyBvJAWqw8oEcj_ZTpZxY8rUmt1vYUZcUMUNnLon971o81J9pItvMh8EuK_k0IlEOqznrmYZ4CzelnY1&t=635295293132453548
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:45 GMT
Location: http://www.ap.gov.in
Server: Microsoft-IIS/7.5
Content-Length: 143
Content-Type: text/html; charset=UTF-8
X-Powered-By: ASP.NET
clean
http://ap.gov.in/_layouts/blank.js?rev=QGOYAJlouiWgFRlhHVlMKA%3D%3D
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:47 GMT
Location: http://www.ap.gov.in
Server: Microsoft-IIS/7.5
Content-Length: 143
Content-Type: text/html; charset=UTF-8
X-Powered-By: ASP.NET
clean
http://ap.gov.in/_layouts/1033/imglib.js
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:47 GMT
Location: http://www.ap.gov.in
Server: Microsoft-IIS/7.5
Content-Length: 143
Content-Type: text/html; charset=UTF-8
X-Powered-By: ASP.NET
clean

Malicious Redirects

First query (normal visit):
GET / HTTP/1.1
Host: ap.gov.in

Result:
HTTP/1.1 302 Redirect
Date: Thu, 15 May 2014 22:29:36 GMT
Location: http://www.ap.gov.in
Server: Microsoft-IIS/7.5
Content-Length: 143
Content-Type: text/html; charset=UTF-8
X-Powered-By: ASP.NET

...143 bytes of data.
Second query (visit from search engine):
GET / HTTP/1.1
Host: ap.gov.in
Referer: http://www.google.com/search?q=ap.gov.in

Result:
The result is similar to the first query. There are no suspicious redirects found.